Deep learning for early detection of papillary bladder cancer on a limited set of cystoscopic images
https://doi.org/10.47093/2218-7332.2024.953.15
Abstract
Aim. The aim of this study was to develop and evaluate the effectiveness of a convolutional neural network (CNN) in detecting papillary bladder cancer (PBC) using a limited set of cystoscopic images.
Materials and methods. Twenty patients who underwent white light cystoscopy and histologically confirmed papillary bladder cancer were included in the study. The dataset included 125 images retrieved and marked by a urologist: 88 images were papillary tumors and 37 were healthy bladder wall tissue. 100 images were selected for training and 25 images were selected for validation. The U-net architecture and the CNN VGG16 model were used. A binary mask was manually created for each image based on the comments given by the urologist. Each image was additionally processed for model compatibility, with 224×224 pixel images as input to reduce the number of parameters. The dataset was augmented by applying vertical and horizontal turns, as well as random rotations. The following metrics were calculated: Dice coefficient, sensitivity, specificity, proportion of false positives and false negatives, accuracy, and area under the ROC curve.
Results. The original data set yielded the following parameters: specificity 84.56%, sensitivity 82.18%, false positive rate 15.44%, false negative rate 17.82%, accuracy 76.40%, and a Dice coefficient 83.16%. For the augmented dataset, the following values were obtained: specificity: 82.99%, sensitivity: 82.70%, false positive rate 17.01%, false negative rate 17.30%, accuracy 74.72%, Dice coefficient – 82.82%. The area under the ROC curves was 92.93% for the original dataset and 91.69% for the augmented dataset.
Conclusion. The CNN created in this study can detect signs of early PBC when analyzing cystoscopic images. The results of the study can be a starting point for developing new methods to diagnose PBC using deep learning technologies.
Keywords
About the Authors
V. S. RozovaAustralia
Vlada S. Rozova, PhD, Research Fellow, School of Computing and Information Systems
Grattan str., Parkville Victoria, Melbourne, 3010
C. Russo
Australia
Carlo Russo, PhD, Researcher, Computational NeuroSurgery (CNS) Laboratory
Balaclava Rd, Macquarie Park, Sydney, 2109
V. Y. Lekarev
Russian Federation
Vladimir Y. Lekarev, Cand. of Sci. (Medicine), urologist, Oncologic Urology Department, University Clinical Hospital No. 2
8/2, Trubetskaya str., Moscow, 119991
V. V. Kazantseva
Russian Federation
Vlada V. Kazantseva, 3th year student
8/2, Trubetskaya str., Moscow, 119991
A. M. Dymov
Russian Federation
Alim M. Dymov, Cand. of Sci. (Medicine), urologist, Senior Researcher, Institute for Urology and Reproductive Health
8/2, Trubetskaya str., Moscow, 119991
A. S. Rzhevskiy
Russian Federation
Alexey S. Rzhevskiy, PhD, Researcher, Laboratory of Targeted Transport of Drugs, Institute of Molecular Theranostics, Scientific and Technological Park of Biomedicine
8/2, Trubetskaya str., Moscow, 119991
A. V. Zvyagin
Russian Federation
Andrey V. Zvyagin, Dr. of Sci. (Physics and Mathematics), Deputy Director, Institute of Molecular Theranostics, Scientific and Technological Park of Biomedicine, Sechenov First Moscow State Medical University (Sechenov University); Honorary Associate Professor, School of Mathematical and Physical Sciences, Macquarie University
Balaclava Rd, Macquarie Park, Sydney, 2109
8/2, Trubetskaya str., Moscow, 119991
References
1. Sung H., Feобоrlay J., Siegel R.L., et al. Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2021 May; 71(3): 209–249. https://doi.org/10.3322/caac.21660. Epub 2021 Feb 4. PMID: 33538338
2. van Hoogstraten L.M.C., Vrieling A., van der Heijden A.G., et al. Global trends in the epidemiology of bladder cancer: challenges for public health and clinical practice. Nat Rev Clin Oncol. 2023 May; 20(5): 287–304. https://doi.org/10.1038/s41571-023-00744-3. Epub 2023 Mar 13. PMID: 36914746
3. Burger M., Grossman H.B., Droller M., et al. Photodynamic diagnosis of non-muscle-invasive bladder cancer with hexaminolevulinate cystoscopy: a meta-analysis of detection and recurrence based on raw data. Eur Urol. 2013 Nov; 64(5): 846–854. https://doi.org/10.1016/j.eururo.2013.03.059. Epub 2013 Apr 8. PMID: 23602406
4. Tully K., Palisaar R.J., Brock M., et al. Transurethral resection of bladder tumours: established and new methods of tumour visualisation. Transl Androl Urol. 2019 Feb; 8(1): 25–33. https://doi.org/10.21037/tau.2018.12.12. PMID: 30976565; PMCID: PMC6414343
5. Fogel A.L., Kvedar J.C. Artificial intelligence powers digital medicine. NPJ Digit Med. 2018 Mar 14; 1: 5. https://doi.org/10.1038/s41746-017-0012-2. PMID: 31304291; PMCID: PMC6548340
6. Haug C.J., Drazen J.M. Artificial intelligence and machine learning in clinical medicine, 2023. N Engl J Med. 2023 Mar 30; 388(13): 1201–1208. https://doi.org/10.1056/NEJMra2302038. PMID: 36988595
7. Egger J., Gsaxner C., Pepe A., et al. Medical deep learning-A systematic meta-review. Comput Methods Programs Biomed. 2022 Jun; 221: 106874. https://doi.org/10.1016/j.cmpb.2022.106874. Epub 2022 May 11. PMID: 35588660
8. Wu Z., Wang F., Cao W., et al. Lung cancer risk prediction models based on pulmonary nodules: A systematic review. Thorac Cancer. 2022 Mar; 13(5): 664–677. https://doi.org/10.1111/1759-7714.14333. Epub 2022 Feb 8. PMID: 35137543; PMCID: PMC8888150
9. Lakshmipriya B., Pottakkat B., Ramkumar G. Deep learning techniques in liver tumour diagnosis using CT and MR imaging – A systematic review. Artif Intell Med. 2023 Jul; 141: 102557. https://doi.org/10.1016/j.artmed.2023.102557. Epub 2023 Apr 29. PMID: 37295904
10. Rich J.M., Bhardwaj L.N., Shah A., et al. Deep learning image segmentation approaches for malignant bone lesions: a systematic review and meta-analysis. Front Radiol. 2023 Aug 8; 3: 1241651. https://doi.org/10.3389/fradi.2023.1241651. PMID: 37614529; PMCID: PMC10442705
11. Chernenkiy I.M., Chernenkiy M.M., Fiev D.N., Sirota E.S. Segmentation of renal structures based on contrast computed tomography scans using a convolutional neural network. Sechenov Medical Journal. 2023; 14(1): 39–49 (In Russian). https://doi.org/10.47093/2218-7332.2023.14.1.39-49
12. Shen M.H., Huang C.C., Chen Y.T., et al. Deep learning empowers endoscopic detection and polyps classification: a multiple-hospital study. Diagnostics (Basel). 2023 Apr 19; 13(8): 1473. https://doi.org/10.3390/diagnostics13081473. PMID: 37189575; PMCID: PMC10138002
13. Kuntz S., Krieghoff-Henning E., Kather J.N., et al. Gastrointestinal cancer classification and prognostication from histology using deep learning: Systematic review. Eur J Cancer. 2021 Sep; 155: 200–215. https://doi.org/10.1016/j.ejca.2021.07.012. Epub 2021 Aug 11. PMID: 34391053
14. Ikeda A., Nosato H. Overview of current applications and trends in artificial intelligence for cystoscopy and transurethral resection of bladder tumours. Curr Opin Urol. 2024 Jan 1; 34(1): 27–31. https://doi.org/10.1097/MOU.0000000000001135. Epub 2023 Oct 30. PMID: 37902120
15. Mikołajczyk A., Grochowski M. Data augmentation for improving deep learning in image classification problem. 2018 International Interdisciplinary PhD Workshop (IIPhDW), Świnouście, Poland, 2018. P. 117–122. https://doi.org/10.1109/IIPHDW.2018.8388338
16. Simonyan K., Zisserman A. Very deep convolutional networks for large-scale image recognition. In 3rd International Conference on Learning Representations (ICLR 2015), 1–14. Computational and Biological Learning Society. https://doi.org/10.48550/arXiv.1409.1556
17. Deng J., Dong W., Socher R., et al. ImageNet: A large-scale hierarchical image database. 2009 IEEE Conference on Computer Vision and Pattern Recognition, Miami, FL, USA, 2009. P. 248–255. https://doi.org/10.1109/CVPR.2009.5206848
18. Ronneberger O., Fischer P., Brox T. U-Net: Convolutional networks for biomedical image segmentation. In: Navab N., Hornegger J., Wells W., Frangi A. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015. MICCAI 2015. Lecture Notes in Computer Science, vol. 9351. Springer, Cham. https://doi.org/10.1007/978-3-319-24574-4_28
19. Milletari F., Navab N., Ahmadi S.-A. V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation, 2016 Fourth International Conference on 3D Vision (3DV), Stanford, CA, USA, 2016. P. 565–571. https://doi.org/10.1109/3DV.2016.79.
20. Zheng X., He B., Hu Y., et al. Diagnostic accuracy of deep learning and radiomics in lung cancer staging: a systematic review and meta-analysis. Front Public Health. 2022 Jul 18; 10: 938113. https://doi.org/10.3389/fpubh.2022.938113. PMID: 35923964; PMCID: PMC9339706
21. Liu Y., Wu M. Deep learning in precision medicine and focus on glioma. Bioeng Transl Med. 2023 May 31; 8(5): e10553. https://doi.org/10.1002/btm2.10553. PMID: 37693051; PMCID: PMC10486341
22. Rozhkova N.I., Roitberg P.G., Varfolomeeva A.A., et al. Neural network-based segmentation model for breast cancer X-ray screening. Sechenov Medical Journal. 2020; 11(3): 4–14 (In Russian). https://doi.org/10.47093/2218-7332.2020.11.3.4-14
23. Balkenende L., Teuwen J., Mann R.M. Application of deep learning in breast cancer imaging. Semin Nucl Med. 2022 Sep; 52(5): 584–596. https://doi.org/10.1053/j.semnuclmed.2022.02.003. Epub 2022 Mar 24. PMID: 35339259
24. Wewetzer L., Held L.A., Steinhäuser J. Diagnostic performance of deep-learning-based screening methods for diabetic retinopathy in primary care – A meta-analysis. PLoS One. 2021 Aug 10; 6(8): e0255034. https://doi.org/10.1371/journal.pone.0255034. PMID: 34375355; PMCID: PMC8354436
25. Bechelli S., Delhommelle J. Machine learning and deep learning algorithms for skin cancer classification from dermoscopic images. Bioengineering (Basel). 2022 Feb 27; 9(3): 97. https://doi.org/10.3390/bioengineering9030097. PMID: 35324786; PMCID: PMC8945332
26. Rösler W., Altenbuchinger M., Baeßler B., et al. An overview and a roadmap for artificial intelligence in hematology and oncology. J Cancer Res Clin Oncol. 2023 Aug; 149(10): 7997–8006. https://doi.org/10.1007/s00432-023-04667-5. Epub 2023 Mar 15. PMID: 36920563; PMCID: PMC10374829
27. Shin Y., Qadir H.A., Aabakken L., et al. Automatic colon polyp detection using region based deep CNN and post learning approa ches. IEEE Access. 2018; 6: 40950–40962. https://doi.org/10.1109/ACCESS.2018.2856402